Skip to main content
GRADS4C Logo

Main navigation

  • Home
  • About Us
    • What is GRADS-4C
    • Who is GRADS-4C
    • Scientific Experts Group
    • Center Overview
  • Training
    • Faculty/Postdocs
    • Graduate Students
    • Undergraduate Students
    • Workshops/Seminars
    • GRADS-4C Fellowship Application
  • Engagement
    • What is Genomics
    • Recruiting
    • Join Us
    • Spotlight
  • Resources
    • Protocols
    • Funding
    • Computational Links
    • Databases
    • Learning Modules
  • Symposium
User account menu
  • Register
  • Log in

Breadcrumb

  1. Home

Databases

Sequence Read Archive (SRA)

https://www.ncbi.nlm.nih.gov/sra

SRA indexes RNA or DNA sequence alignments from high throughput sequencing studies. This is the largest publicly available repository of raw high throughput sequencing data and alignment information.   Contains data from all branches of life, as well as metagenomics and environmental surveys. Analysis of this data can facilitate new discoveries based on new questions. 

GEO Datasets

https://www.ncbi.nlm.nih.gov/gds

GEO includes epigenomic experiments (e.g., ChIP-seq) as well as other molecular genomic data. Contains curated gene expression datasets, as well as additional resources that include cluster tools and differential expression queries.  Enter relevant search terms to locate experiments of interest. 

Database of Genotype and Phenotype (dbGaP)

https://www.ncbi.nlm.nih.gov/gap/

Archives and distributes the data and results of studies that have investigated the interaction of genotype and phenotype in humans.  The information includes genome-wide association studies, medical sequencing, molecular diagnostic assays, as well as association between genotype and non-clinical traits. Two levels of access, open and controlled, do exist.

NCI Genomics Data Commons Portal

https://portal.gdc.cancer.gov/

This provides a data service supporting the receipt, quality control, integration, storage, and redistribution of standardized cancer genomic data sets derived from various legacy and active NCI programs. The NCI large-scale cancer genome research programs include The Cancer Genome Atlas (TCGA), Therapeutically Applicable Research to Generate Effective Treatments (TARGET), and the Cancer Genome Characterization Initiative (CGCI).  This unified repository and cancer knowledge base thus enables data sharing across cancer genomic studies in support of precision medicine.

EMBL's European Bioinformatics Institute (EBI) European Nucleotide Archive (ENA)

https://www.ebi.ac.uk/ena/browser/home

This is an open supported platform for the management, sharing, integration, archiving and dissemination of sequence data. The data coordination partnerships span the life sciences, covering such areas as livestock genomics, marine biotechnology, biodiversity, pathogen surveillance and stem cell biology. 

Upcoming Events

Previous Events

Intro to Cloud Computing: A Hands-On Introductory Workshop - Cloud Computing Made Simple
Fri, 04/25/2025 - 10:00
Mapping the Hidden World of Soil with Galaxy: A Hands-On Introduction and Metagenomics Case Study
Wed, 04/23/2025 - 13:00
GRADS-4C Second Annual Symposium - SAVE THE DATE
Wed, 03/05/2025 - 09:00
GRADS-4C Seminar 2025: ScHARe
Thu, 03/13/2025 - 12:30
GRADS-4C Seminar 2025: Genomics of Human Genetic Variation
Fri, 02/21/2025 - 14:00

Funded by

This work is supported by the National Human Genome Research Institute of the National Institutes of Health under Award Number 1U24HG013013-01.